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Codi Kodama 9Codi Kodama 9 

Your query request was running for too long.

We are using a third-party app (DBAmp) to back-up our SFDC org into a SQL server. We are getting an error related to the query time limit. I found an article online (https://getsatisfaction.com/dbamp/topics/any_idea_what_this_means_besides_the_obvious) indicating that SFDC Support will increase that time from 120 seconds to up to 10 minutes. I'm requesting that the limit be increased so our integration will continue to work. Currently it's failing periodically.
 
Venkat PolisettiVenkat Polisetti
DBAmp may have some settings to control the amount of data that it is pulling for backup. Try them. If that does not solve, create a Case with under "Help & Training" section.
sfScottsfScott
A different approach could be to request support to enable Heroku Connect for your org.  This uses a POSTGRES database on Heroku so may not work for your needs, but when I attended a Developer meetup performance was very good.