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Some reports and dashboards are not imported into eclipse

I'm working with a large organization that has thousands of dashboards and reports some of which need to be updated. My plan was to import them into eclipse in order to identify and update the relevant ones, but I'm having trouble importing some of them. I've tried several variations of creating and refreshing projects (some projects with just one folder to rule out any data limitations) but for some reason some reports and dashboards just do not show up in their folders. I can see the reports when I try to add/remove components from eclipse (so there shouldn't be any issue with permissions) but after the import they aren't there. Likewise they are displayed as <members> in the package.xml file but do not appear in the tree. Has anyone else run into this issue or able to propose a workaround? 
Evan KennedyEvan Kennedy
You can use the Force.com ant migration tool, it's a bit more technical, but it should allow you to download all the reports.

http://www.salesforce.com/us/developer/docs/daas/